BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB028G07SP1|AL428961
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1126 1242 0.0
3x_Contig1753 396 e-110
>3x_Contig1126
Length = 5421
Score = 1242 bits (624), Expect = 0.0
Identities = 678/688 (98%), Gaps = 7/688 (1%)
Strand = Plus / Plus
Query: 1 gatccactggcagaggttactggattgaaaaagatgataccctcactcacctacttcccg 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 4741 gatccactggcagaggttactggattgaaaaagatgataccctcact-acctacttcccg 4799
Query: 61 aggtagaggtgcaaagatcatgttcagacacaaagaaggagaagaagctaggcagatcgg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4800 -ggtagaggtgcaaagatcatgttcagacacaaagaaggagaagaagctaggcagatcgg 4858
Query: 121 tcatattggtgttttacatcctgtaagtaatgtccaacttcgacattccatatgccggtt 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4859 tcatattggtgttttacatcctg-aagtaatgtccaacttcgacattccatatgccggtt 4917
Query: 181 cttacgttgaaatcaattcagcaagctttcttatagataggtagagataatacttgcact 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4918 cttacgttgaaatcaattcag-aagctttcttatagataggtagagataatacttgcact 4976
Query: 241 ctcatgtattaattctataaaattttgatataagtgtatatatacttaccactgcratat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4977 ctcatgtattaattctataaaattttgatataagtgtatatatacttaccactgcaatat 5036
Query: 301 tttcatcacgcaaaagtcagttggacttctacttctcgacaatgtctcgagacgagtgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5037 tttcatcacgcaaaagtcagttggacttctacttctcgacaatgtctcgagacgagtgat 5096
Query: 361 cwatatccttctgtacctcgtccttgagttttgaaatctcttggataagttggtctttgt 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5097 caatatccttctgtacctcgtccttgagttttgaaatctcttggataagttggtctttgt 5156
Query: 421 gcacatccgtagctatgccttcttcggtatccccattcacttctggccctaatgtcttgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5157 gcacatccgtagctatgccttcttcggtatccccattcacttctggccctaatgtcttgt 5216
Query: 481 cctttagagtctgttcatacatttcttgccattcaactttctgaggtttgaaccaagaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5217 cctttagagtctgttcatacatttcttgccattcaactttctgaggtttgaaccaagaag 5276
Query: 541 atttagataaccatttgtgctttgctctttttcttacgcatgggattcatcagaaagttt 600
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 5277 atttagataaccatttgtgcttt-ctctttttcttac-catgggattcatcagaaagttt 5334
Query: 601 ctcctgggcagattctaattcagcaacaagtttcctctgtctagcaacttgttccggatc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5335 ctcctgggcagattctaattcagcaacaagtttcctctgtctagcaacttgttccggatc 5394
Query: 661 cattgggtcttcaatttctacgaactct 688
||||||||| || |||||||||||||||
Sbjct: 5395 cattgggtc-tccatttctacgaactct 5421
>3x_Contig1753
Length = 23959
Score = 396 bits (199), Expect = e-110
Identities = 212/217 (97%), Gaps = 1/217 (0%)
Strand = Plus / Plus
Query: 691 actgagtacagacataccaatggctttaagaagtttaggcattttctttctataactcat 750
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actgagtaca-acataccaatggctttaagaagtttaggcattttctttctataactcat 59
Query: 751 atgcscgtsaactatctcactgcagttcacattttcaatatccggaacactatttattgg 810
|||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 60 atgcccgtcaactatctcactgcagtccacattttcaatatccggaacactatttattgg 119
Query: 811 tgatattcctgcwacagtactcaaccctccacctgtggctctgaataaataacctaaaat 870
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tgatattcctgcaacagtactcaaccctccacctgtggctctgaataaataacctaaaat 179
Query: 871 ccaatctctatttgaatatccattcaaaaatcttcca 907
|||||||||||||||||||||||||||||||||||||
Sbjct: 180 ccaatctctatttgaatatccattcaaaaatcttcca 216
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6990
Number of Sequences: 1807
Number of extensions: 6990
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 2
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.4 bits)
S2: 50 (100.0 bits)